PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015689-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 232aa    MW: 25896.8 Da    PI: 7.3027
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015689-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116082123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  NNU_015689-RA 60 YTCTFCRREFRSAQALGGHMNVH 82
                   9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-65786No hitNo description
PfamPF139121.7E-56083IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1576087IPR007087Zinc finger, C2H2
SMARTSM003550.00666082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MIQLQKLAQS QQQQPNPSLA AGSWMWNAKQ AQDDDDSWEV RAFAEDTGNI LGTTWPPRSY  60
TCTFCRREFR SAQALGGHMN VHRRDRARLR QSPPASADPS SSSNSSSTFL IPTPEFAPNG  120
AYCLLYPLPS PTNSFTPTSL NRCMDSPPTL LSLPNYSTNT LVPSCPPSIN FPASTDIQAS  180
SCHSANKLEP SFSVDDSYNY NYNKELPVEE LDLELRLGQR PPSLRRSVRR WP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-135582229superman protein
2l1o_A2e-135582229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269999.11e-164PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLB9N2N52e-80B9N2N5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09000.14e-80(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-38C2H2 family protein